OR13D2P Olfactory Receptor
| Gene Symbol | OR13D2P1 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | D |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR9-9, HsOR9.4.5P, ORL326 |
| External Ids | HGNC: 15105 GeneBank: AF399467, BK004606, NG_004380 ORDB: ORL326 |
| Build #39 labels | OR13D2P |
| Chromosomal location | 9:104,590,017-104,590,950 (+) |
| Cluster | 9@107 |
| Synteny | CLIC#19 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C3 | 61.72% | 303 |
| OR13C4 | 60.7% | 313 |
| OR13D1 | 64.82% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13D2 | 90% | 311 |
| Mouse | Or13d1 | 65% | 313 |
| Rat | Or13c7d | 64% | 317 |
| Cow | OR13D2 | 89% | 305 |
| Orang | OR13D2 | 99% | 311 |
| Horse | OR13D2 | 91% | 311 |
| Horse | OR13D2G | 88% | 311 |
| Chimp | OR13D2 | 100% | 311 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10935_at |
Sequence information
| Nucleotide sequence |
ATGGAAAGGACCAATTGGACAGAGATAGAGTTCATTCTGCAAGGACTTTCAGGGTACCCA AGAGCTGAAAAATTCCTTTTCGTGATGTGCTTAGTGATGTACCTGGTGATTCTCCTAGGT AATGGCACCTTGATCATTCTGACACTCCTGGATGCTCGTCTCCACACACCCATGTACTTC TTCCTTGGGAATCTTTCCTTCCTAGACATTTGGTACACATCCTCCTCCATCCCCTCAATG CTGATACACTTCCTATCAGAGAAGAAAACCATCTCCTTCACTAGATGTGTGATTCAAATG TCTGTCTCTTACACTATGGGATCCACCGAGTGTGTGCTTCTAGCAGTGATGGCATATGAC CGTTATGTAGCCATCTGCAACCCTCTGAGATATCCCATCATCATGGGCAAGGCACTTTGT ATTCAGATGGTGGCTGTCTCTTGGGGACTAGGCTTTCTCAACTCATTGACAGAAACTGTT CTTGCAATACGGTTACCCTTCTGTGGAAAAAAATGTCATTAATCATTTTGTTTGTGAAAT ATTGGCCTTTGTCAAGCTGGCTTGCACAGATACTTCCTTGAATGAGATTATTATAATGTT GGGCAATGTAATATTTTTGTTTTCTCCATTACTGCTGATTTGTATCTCCTACATCTTTAT CCTTTCTACTGTACTAAGAATCAATTCAGCTGAAGGAAGGAAAAAGGCCTTTTCCACCTG CTCAGCCCACATGACAGTGGTGATTGTGTTTTATGGGACAATCCTCTTCATGTACATGAA GGCAAAGTCCAAAGACTCTGCTTTTGACAAACTGATTGCCCTGTTCTATGGCATAGTCAC CCCCATGCTCAATCCTATCATCTATAGCCTGAGGAATACAGAGGTGCATGGAGCTATGAG GAAATTAATGAGTAGACCCTGGTTCTGGAGGAAA |
| Conceptual translation |
MERTNWTEIEFILQGLSGYPRAEKFLFVMCLVMYLVILLGNGTLIILTLLDARLHTPMYF FLGNLSFLDIWYTSSSIPSMLIHFLSEKKTISFTRCVIQMSVSYTMGSTECVLLAVMAYD RYVAICNPLRYPIIMGKALCIQMVAVSWGLGFLNSLTETVLAIRLPFCGK\VINHFVCE ILAFVKLACTDTSLNEIIIMLGNVIFLFSPLLLICISYIFILSTVLRINSAEGRKKAFST CSAHMTVVIVFYGTILFMYMKAKSKDSAFDKLIALFYGIVTPMLNPIIYSLRNTEVHGAM RKLMSRPWFWRK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 107,352,625 | 107,352,625 | SNP | A/G | rs13291813 (DbSNP) | |
| 9 | 107,352,323 | 107,352,323 | SNP | C/T | rs58443492 (DbSNP) | |
| 9 | 107,352,699 | 107,352,699 | SNP | C/T | rs73519623 (DbSNP) | |
| 9 | 107,352,417 | 107,352,417 | SNP | G/T | rs6479256 (DbSNP) | |
| 9 | 104,590,136 | 104,590,136 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 9 | 104,590,344 | 104,590,344 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 9 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.