OR4A41P Olfactory Receptor
| Gene Symbol | OR4A41P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.8.19P |
| External Ids | HGNC: 31260 GeneBank: NG_004413 |
| Build #39 labels | |
| Chromosomal location | 11:48,589,739-48,590,690 (+) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A44P | 79.68% | 315 |
| OR4A6P | 80.83% | 313 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 67% | 310 |
| Mouse | Or4a39 | 69% | 312 |
| Rat | Or4a77e | 68% | 313 |
| Cow | OR4A2 | 63% | 311 |
| Orang | OR4A47P | 60% | 307 |
| Horse | OR4A124 | 69% | 307 |
| Chimp | OR4A44P | 79% | 310 |
Sequence information
| Nucleotide sequence |
AGAGAAGAGTAAAGGGGACTGAGTAACAATGTTACAGGATTTGTCCTCTTGGGCAACACT CAGGATCCTGATGTGCAAAATGCATTATTTGTCATGGTTTTACTCACATACATTGTGACT ACAGTGGGGAACCTGCTCATTGTGGTGGCTATTATTGCCAGTCCCTCCTTGGGCTCCCCA ATATACTTCTTCCTTGTCTGCCTGTCATTTATAGATGCTGCATATTCCACAGCCATTTGT CCCAAATTGACTGTAGAGTTACTCCATGACAAAAAGACTATTTTCTTCACAGCATGCATG GGGCAGCTATTTAAAGACCACTTATTTGGTGGTGCTGAGGTCTTCCTACTGGTGGGGATG GTCTATGATCGCTATGTGGCCGACTGTAAGCCACTGCACTATTTTACCATCATGAATCGA CAGGTTTGCATCCTTCTCTTGCTGATGGCTGTGACTGGAGGTTTTATGAATTCTGTGTTT CAAATTGTTGTGTACAATCTCCCTTTCTGTGGTGCCAGTGTCACTGACCACTTTGTCTGT GACGTGTACCCATTATTGGAACTGGCGTGCACTGATACCTACTTTATAGGCCTCACTGTT GTGGCCAGTGGTGGAGCTATGTGTATGTTTGTCTTCACCCTTCTGCTAATCTCCTATGGA GTCATTCTAGTTTAGGTAGTTTACCTTAAAACTTACAGTCAGGAAGGGAGGTGTAAAACC TTCTCTGCCTGCATCTCCTGCATCACTGTGGTTGTCCTGTTTTTAGTTCCCTGATTTTCC TGTTTGTTAGACCTGTTTTGAACTTTCCTATTGATAAATTCATGACTGTGTTTTATACAG TTATCACACACCCATGTTGAATTCATTAATATACACACTGAGAAATGTAGAGATGAGAAT TGCTGTAAAAACCAATGTAAAAAAACTCTGGCATAAAAACTAAACTATAGTT |
| Conceptual translation |
REEXGLSNNVTGFVLLGNTQDPDVQNALFVMVLLTYIVTTVGNLLIVVAIIASPSLGSP IYFFLVCLSFIDAAYSTAICPKLTVELLHDKKTIFFTACMGQLFKDHLFGGAEVFLLVGM VYDRYVADCKPLHYFTIMNRQVCILLLLMAVTGGFMNSVFQIVVYNLPFCGASVTDHFVC DVYPLLELACTDTYFIGLTVVASGGAMCMFVFTLLLISYGVILVXVYLKTYSQEGRCKT FSACISCITVVVLFLVP/IFLFVRPVLNFPIDKFMTVFYTVIT/PMLNSLIYTLRNVE MRIAVKTNVKKLWHKNXIV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 48,611,965 | 48,611,967 | Del(3) | -/GGT | rs61661645 (DbSNP) | |
| 11 | 48,611,960 | 48,611,963 | Del(4) | -/GTTT | rs57981298 (DbSNP) | |
| 11 | 48,611,960 | 48,611,968 | Del(9) | -/GTTTAGGTA | rs67994309 (DbSNP) | |
| 11 | 48,611,972 | 48,611,973 | In-Del(2) | -/AA | rs61397477 (DbSNP) | |
| 11 | 48,611,971 | 48,611,979 | In-Del(9) | -/AACTACCTA | rs71948196 (DbSNP) | |
| 11 | 48,611,651 | 48,611,651 | SNP | A/G | rs11039858 (DbSNP) | |
| 11 | 48,611,400 | 48,611,400 | SNP | A/G | rs10838972 (DbSNP) | |
| 11 | 48,612,055 | 48,612,055 | SNP | A/T | rs10838973 (DbSNP) | |
| 11 | 48,612,024 | 48,612,024 | SNP | A/T | rs6485891 (DbSNP) | |
| 11 | 48,611,619 | 48,611,619 | SNP | C/G | rs72904693 (DbSNP) | |
| 11 | 48,611,969 | 48,611,969 | SNP | C/G | rs59203322 (DbSNP) | |
| 11 | 48,612,063 | 48,612,063 | SNP | C/G | rs12278284 (DbSNP) | |
| 11 | 48,611,440 | 48,611,440 | SNP | C/T | rs73470655 (DbSNP) | |
| 11 | 48,611,988 | 48,611,988 | SNP | G/T | rs11039859 (DbSNP) | |
| 11 | 48,611,924 | 48,611,924 | SNP | G/T | rs72904694 (DbSNP) | |
| 11 | 48,589,848 | 48,589,848 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 48,590,067 | 48,590,067 | SNP | G/C | 1000GP (CEU) | |
| 11 | 48,590,099 | 48,590,099 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 48,590,417 | 48,590,417 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 48,590,436 | 48,590,436 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 11 | 48,590,472 | 48,590,472 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 48,590,488 | 48,590,488 | SNP | G/A | 1000GP (CEU) | |
| 11 | 48,590,503 | 48,590,503 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 11 | 48,590,511 | 48,590,511 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 48,589,895 | 48,589,895 | SNP | G/T | 1000GP (CHBJPT) | |
| 11 | 48,590,408 | 48,590,408 | SNP | G/A | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,479,497 | 48,689,328 | CopyNumber | Variation_5013 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| 11 | 48,611,191 | 48,614,242 | Deletion | #210 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.