OR4C1P Olfactory Receptor
| Gene Symbol | OR4C1P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-128, OR11-125, HSHTPCRX11, HsOR11.11.13P, ORL3653 |
| External Ids | HGNC: 8292 GeneBank: AF546462-AF546475, BK004572, BK004769, HSHTPRX11, NG_002184 ORDB: ORL3653 |
| Build #39 labels | OR4C1P |
| Chromosomal location | 11:55,509,729-55,510,662 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A2P | 64.21% | 299 |
| OR4C10P | 64.21% | 299 |
| OR4C9P | 63.88% | 299 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4C1 | 88% | 305 |
| Mouse | Or4c1 | 85% | 308 |
| Rat | Or4c1 | 85% | 308 |
| Cow | OR4C1F | 79% | 307 |
| Orang | OR4C9P | 63% | 299 |
| Horse | OR4C1 | 87% | 308 |
| Chimp | OR4C1 | 97% | 311 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | X64985 |
Sequence information
| Nucleotide sequence |
ATGGATCACCACATGCCTCCCAACAATGTGACTGAATTCATTCTCTTGGGGCTCACACAG AATCCACACTTGCAGAAAATACTCTTTATTGTATTTTTATTTATTTTTCTATTTACCATG CTGGCCAATCTGTTCATTGTCATCACCATCTCCTGTAGCCCCACACTTTCATCACCCATG TACTTCTTTCTCACTTACTTATCCTTTATAGATGCCTCCTACACCTCTGTCACAACCCCC AAAATGATCACCGACCTGCTCTACCAGAGGAGAACTATTTCCTTGGCTGGCTGCCTGACT CAGCTCTTTGTGGAGCACTTGCTGGGAGGCTCAGAGATCATCCTCCTTATTGTCATGGCC TATGACCGCTACGTGGCCATCTGCAAGCCCCTGCACTACACAACCATTATGCAACAAGGG ATCTGCCACCTTCTGGTGGTGATAGCCTGGATTGGAGGCATCCTGCATGCCACTGTGCAG ATTCTTTTCATGACCGACTTGCCCTTCTGTGGTCCCCAATGTCATTGACCACTTTATGTG TGATCTCTTCCCATTGTTGAAACTTGCCTGCAGAGACACCTACAGACTTGGGATGCTGGT GGCAGCCAACAGTGGAGCCATGTGCTTGCTCATCTTTTCCCTGCTCGTCATCTCCTACAT AGTCATCCTGAGCTCCCTGAAATCCTATAGCTCTGAAGGACAGCACAAAGCCCTCTCCAC CTGTGGCTCCCACTTTACTGTCGTTGTACTCTTTTTTGTGCCTTGCATATTCACCTACAT GCATCCTGTGGTCACCTACTCTGTGGACAAGTTGGTGACTGTGTTCTTTGCAATCCTCAC TCCCATGTTAAATCCTATAATTTACACTGTGAGAAACACAGAGGTAAAAAATGCCGTGAG GAGTTTGTTGAGGAAAAGAGTAACAGTTTATGCA |
| Conceptual translation |
MDHHMPPNNVTEFILLGLTQNPHLQKILFIVFLFIFLFTMLANLFIVITISCSPTLSSPM YFFLTYLSFIDASYTSVTTPKMITDLLYQRRTISLAGCLTQLFVEHLLGGSEIILLIVMA YDRYVAICKPLHYTTIMQQGICHLLVVIAWIGGILHATVQILFMTDLPFCGP\VIDHFM CDLFPLLKLACRDTYRLGMLVAANSGAMCLLIFSLLVISYIVILSSLKSYSSEGQHKALS TCGSHFTVVVLFFVPCIFTYMHPVVTYSVDKLVTVFFAILTPMLNPIIYTVRNTEVKNAV RSLLRKRVTVYA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,277,617 | 55,277,617 | SNP | A/G | rs17579825 (DbSNP) | |
| 11 | 55,277,806 | 55,277,806 | SNP | A/G | rs73467531 (DbSNP) | |
| 11 | 55,278,098 | 55,278,098 | SNP | C/T | rs552884 (DbSNP) | |
| 11 | 55,277,761 | 55,277,761 | SNP | C/T | rs17494990 (DbSNP) | |
| 11 | 55,277,908 | 55,277,908 | SNP | C/T | rs34008069 (DbSNP) | |
| 11 | 55,277,909 | 55,277,909 | SNP | G/A | rs495119 (DbSNP) | |
| 11 | 55,278,100 | 55,278,100 | SNP | G/T | rs17579895 (DbSNP) | |
| 11 | 55,510,141 | 55,510,141 | SNP | A/G | 1000GP (CEU) | |
| 11 | 55,510,285 | 55,510,285 | SNP | T/C | 1000GP (CEU) | |
| 11 | 55,510,432 | 55,510,432 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 55,510,433 | 55,510,433 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 55,510,484 | 55,510,484 | SNP | T/C | 1000GP (CEU) | |
| 11 | 55,510,624 | 55,510,624 | SNP | G/T | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,121,706 | 55,340,753 | CopyNumber | Variation_9185 (DGV) |
| 11 | 55,276,602 | 55,355,722 | CopyNumber | Variation_9186 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4C1P.aApr07-unspliced | main_exon | CDS_partial | chr11 | 55,510,106 | 55,510,444 | + |