OR5H5P Olfactory Receptor
| Gene Symbol | OR5H5P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR3-3, HsOR3.3.7P, ORL3099 |
| External Ids | HGNC: 14765 GeneBank: BK004698, NG_002230 ORDB: ORL3099 |
| Build #39 labels | OR5H5P |
| Chromosomal location | 3:98,197,211-98,198,135 (+) |
| Cluster | 3@98 |
| Synteny | CLIC#9 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5H14 | 82.64% | 311 |
| OR5H6 | 79.22% | 308 |
| OR5H7P | 78.96% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5H13 | 71% | 308 |
| Mouse | Or5h19 | 72% | 306 |
| Rat | Or5h19-ps | 71% | 308 |
| Cow | OR5H13 | 72% | 308 |
| Orang | OR5H8 | 77% | 308 |
| Horse | OR5H8 | 71% | 308 |
| Chimp | OR5H14BP | 83% | 310 |
| Chimp | OR5H14 | 83% | 310 |
| Chimp | OR5H7 | 81% | 308 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | AW451975 |
Sequence information
| Nucleotide sequence |
ATGGAAGAGAAAAATGCAACATTGCTGACAGAGTTTGTTCTCACATTATTTTTATATCAA CCTCACTGGAAAATACCCCTGTTCCTGGCATTCTTGGTAATATATCTCATCACCATCTTT GGGAATCTTGGTCTGATTGCTGTCGTATGGAAAGACCCTCACCTTCATATCCCAATATAC TTATTCCTTGAGAATTTAGCTTTTGTGGATGATTTGTTATCATCCACATGACTCTGAAGA TGCTGATCAACTTCTTCACTAAGAGTAAGTTGATTTCTCTCTGAATGCTGGATACATTTT TTTTCCTTTGCAATTGGTGTAACCACAGAATGTTTTATCTTGGCAACAATGGCATATGAT CGCTATGTAGCCATATGCAAACCTTTACTTTATCCAGTCATTATGACCAATGGACTGTGC ATCTGGCTATTAATCTTGTCATTTCTAGGTGGCCTTCTTCATGCTTTAATTCATGAAGGT TTTTTATAGATTAACCTTCTGTAATTCCAACACAATACATCACTTTTAATGTGACATTAT CCCATTGTTAAAAATTTTCTGTACTGATTCTTCTATTAACTTTCCAATGGTTTTTATTTT CTCATGTTCAATTCAAGTTTTCACCATTGGGACTGTTCTTGTATCTTATACATTTGTCCT CTCTACAATCTTGAAAAAGAAGTCTGTCAAAGGCATAAGAAAAGACTTCTCCACCTGTGG AGCTCATATCTTACCTGTATCTTTATACTATGGGCCCCTCGCCTTCATGTATGTGGGCTC TGCATCCCAACGGGCTGATGACCAAGATATGATGGAGTCTCTATTTTACACTGTCATAGT TCCTTTATTAAATCCCATGATCTACAGCCTGAGAAATAAGCAAGTAATAGATTCATTCAC AAAAATGTTCAAAGGAAATAATGTT |
| Conceptual translation |
MEEKNATLLTEFVLTLFLYQPHWKIPLFLAFLVIYLITIFGNLGLIAVVWKDPHLHIPIY LFLENLAFVDDLLSST/TLKMLINFFTKSKLISLXLDTFFFLCNWCN\ECFILATMA YDRYVAICKPLLYPVIMTNGLCIWLLILSFLGGLLHALIHEGF\RLTFCNSNTIHHFX DIIPLLKIFCTDSSINFPMVFIFSCSIQVFTIGTVLVSYTFVLSTILKKKSVKGIRKDFS TCGAHILPVSLYYGPLAFMYVGSASQRADDQDMMESLFYTVIVPLLNPMIYSLRNKQVID SFTKMFKGNNV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 97,916,542 | 97,916,541 | Ins(2) | -/AC | rs10684786 (DbSNP) | |
| 3 | 97,916,543 | 97,916,542 | Ins(2) | -/CA | rs58417252 (DbSNP) | |
| 3 | 97,916,544 | 97,916,543 | Ins(2) | -/CA | rs67206857 (DbSNP) | |
| 3 | 97,916,201 | 97,916,202 | mnp | AT/CC | rs35879903 (DbSNP) | |
| 3 | 97,916,787 | 97,916,788 | mnp | GT/AC | rs71623585 (DbSNP) | |
| 3 | 97,916,391 | 97,916,391 | SNP | A/C | rs6765605 (DbSNP) | |
| 3 | 97,916,782 | 97,916,782 | SNP | A/C | rs6766035 (DbSNP) | |
| 3 | 97,916,375 | 97,916,375 | SNP | A/G | rs6765598 (DbSNP) | |
| 3 | 97,916,615 | 97,916,615 | SNP | A/G | rs6776813 (DbSNP) | |
| 3 | 97,916,734 | 97,916,734 | SNP | A/G | rs6765940 (DbSNP) | |
| 3 | 97,916,231 | 97,916,231 | SNP | A/G | rs6765411 (DbSNP) | |
| 3 | 97,916,064 | 97,916,064 | SNP | A/G | rs11706390 (DbSNP) | |
| 3 | 97,916,199 | 97,916,199 | SNP | A/G | rs35393131 (DbSNP) | |
| 3 | 97,916,387 | 97,916,387 | SNP | C/T | rs6768197 (DbSNP) | |
| 3 | 97,916,788 | 97,916,788 | SNP | C/T | rs6802178 (DbSNP) | |
| 3 | 97,916,351 | 97,916,351 | SNP | C/T | rs59017334 (DbSNP) | |
| 3 | 98,197,220 | 98,197,220 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,197,355 | 98,197,355 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 3 | 98,197,357 | 98,197,357 | SNP | A/C | 1000GP (CEU) | |
| 3 | 98,197,358 | 98,197,358 | SNP | T/C | 1000GP (CEU) | |
| 3 | 98,197,387 | 98,197,387 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,197,507 | 98,197,507 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,197,531 | 98,197,531 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,197,543 | 98,197,543 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,197,547 | 98,197,547 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,197,771 | 98,197,771 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 3 | 98,197,890 | 98,197,890 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,197,938 | 98,197,938 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,197,943 | 98,197,943 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,197,944 | 98,197,944 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 3 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 3 | 97,887,491 | 97,919,363 | CopyNumber | Variation_37833 (DGV) |
| 3 | 97,874,279 | 97,931,369 | CopyNumber | Variation_62080 (DGV) |
| 3 | 97,899,419 | 97,939,393 | CopyNumber | Variation_68423 (DGV) |
| 3 | 97,908,878 | 97,924,741 | CopyNumber | Variation_68427 (DGV) |
| 3 | 97,908,945 | 97,916,951 | CopyNumber | Variation_98383 (DGV) |
| CopyNumber | 116 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.