OR5I1 Olfactory Receptor
Gene Symbol | OR5I11 (View this gene in GeneCards) |
Family | 5 |
Subfamily | I |
Pseudogene | No |
CORP pseudogene probability score | 0.02 (functional) |
Aliases | OLF1, OR11-159, HsOR11.11.35, ORL165 |
External Ids | HGNC: 8347 GeneBank: BC069093, BK004518, HSU56420, NM_006637 ORDB: ORL165 |
Build #39 labels | OR5I1 |
Chromosomal location | 11:55,935,459-55,936,400 (-) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR5AS1 | 56.44% | 303 |
OR5D18 | 57.51% | 313 |
OR9M1P | 57.05% | 305 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR5I1B | 90% | 314 |
Mouse | Or5i1 | 90% | 313 |
Rat | Or5i1 | 89% | 314 |
Cow | OR5I1FP | 86% | 314 |
Cow | OR5I1DP | 83% | 314 |
Cow | OR5I1EP | 85% | 308 |
Orang | OR5G1 | 53% | 307 |
Horse | OR9M1 | 58% | 308 |
Chimp | OR5I1P | 97% | 314 |
Expression evidences
Source | Accession |
---|---|
mRNA | BC069093 |
GNF Atlas2 | 208521_at |
Sequence information
Nucleotide sequence |
ATGGAATTTACAGATAGAAACTACACGTTGGTCACTGAGTTTATTCTATTAGGTTTTCCA ACTCGCCCTGAACTGCAGATTGTCCTGTTCCTCATGTTTCTGACATTGTATGCTATAATT CTGATAGGGAACATTGGATTGATGCTGTTGATCAGGATTGATCCTCACCTTCAAACCCCC ATGTATTTTTTCCTTAGCAACCTATCATTTGTAGACCTTTGCTATTTCTCAGACATTGTT CCCAAAATGCTGGTCAATTTCCTCTCGGAGAACAAATCTATTTCCTATTATGGGTGTGCC CTGCAGTTTTATTTTTTCTGTACTTTTGCAGATACAGAATCCTTCATCCTGGCCGCCATG GCCTATGATCGCTATGTCGCCATCTGTAACCCTTTATTGTACACAGTTGTGATGTCTAGG GGCATCTGTATGCGGTTGATTGTCTTGTCATACCTTGGAGGCAACATGAGTTCCCTGGTT CACACATCCTTTGCCTTTATTCTGAAATATTGTGACAAAAATGTTATTAATCATTTTTTC TGTGACCTCCCTCCCCTGCTTAAACTATCCTGCACTGACACAACAATTAATGAGTGGCTC CTCTCCACATACGGCAGCTCAGTGGAAATCATTTGTTTTATCATCATCATCATCTCCTAC TTTTTCATTCTTCTCTCAGTCTTAAAGATCCGCTCTTTCAGTGGGAGGAAGAAGACCTTT TCTACATGCGCCTCTCACCTGACTTCAGTGACGATCTACCAAGGGACTCTCCTCTTTATT TACTCACGGCCCAGCTACCTGTATTCTCCAAACACTGATAAAATTATCTCAGTGTTCTAC ACCATTTTCATTCCAGTGCTGAATCCGTTGATTTATAGTTTGAGAAATAAAGATGTAAAG GATGCAGCTGAGAAAGTTCTAAGATCAAAGGTAGATTCTTCA |
Conceptual translation |
MEFTDRNYTLVTEFILLGFPTRPELQIVLFLMFLTLYAIILIGNIGLMLLIRIDPHLQTP MYFFLSNLSFVDLCYFSDIVPKMLVNFLSENKSISYYGCALQFYFFCTFADTESFILAAM AYDRYVAICNPLLYTVVMSRGICMRLIVLSYLGGNMSSLVHTSFAFILKYCDKNVINHFF CDLPPLLKLSCTDTTINEWLLSTYGSSVEIICFIIIIISYFFILLSVLKIRSFSGRKKTF STCASHLTSVTIYQGTLLFIYSRPSYLYSPNTDKIISVFYTIFIPVLNPLIYSLRNKDVK DAAEKVLRSKVDSS Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 55,703,537 | 55,703,537 | NS | A/C | S/A | rs57139368 (DbSNP) |
11 | 55,703,728 | 55,703,728 | NS | A/G | L/S | rs4367963 (DbSNP) |
11 | 55,703,650 | 55,703,650 | NS | A/G | F/S | rs9666086 (DbSNP) |
11 | 55,703,450 | 55,703,450 | NS | A/T | C/S | rs61995927 (DbSNP) |
11 | 55,703,226 | 55,703,226 | NS | C/G | M/I | rs61995928 (DbSNP) |
11 | 55,703,861 | 55,703,861 | NS | C/T | G/R | rs17597625 (DbSNP) |
11 | 55,702,961 | 55,702,961 | NS | C/T | V/I | rs9665861 (DbSNP) |
11 | 55,703,011 | 55,703,011 | NS | G/A | P/L | rs61995929 (DbSNP) |
11 | 55,702,958 | 55,702,958 | NS | G/T | L/I | rs11607055 (DbSNP) |
11 | 55,703,010 | 55,703,010 | SYN | A/C | P/P | rs9665863 (DbSNP) |
11 | 55,703,523 | 55,703,523 | SYN | A/G | A/A | rs11231594 (DbSNP) |
11 | 55,703,766 | 55,703,766 | SYN | A/G | Y/Y | rs17597589 (DbSNP) |
11 | 55,703,247 | 55,703,247 | SYN | A/G | I/I | rs4465383 (DbSNP) |
11 | 55,936,385 | 55,936,385 | NS | T/C | R/G | 1000GP (CEU) |
11 | 55,935,771 | 55,935,771 | SYN | G/A | I/I | 1000GP (CEU, CHBJPT) |
11 | 55,935,485 | 55,935,485 | NS | C/T | V/I | 1000GP (CEU) |
11 | 55,935,535 | 55,935,535 | NS | G/A | P/L | 1000GP (CEU) |
11 | 55,935,534 | 55,935,534 | SYN | C/A | P/P | 1000GP (CEU) |
11 | 55,936,174 | 55,936,174 | NS | A/G | F/S | 1000GP (CEU) |
11 | 55,936,252 | 55,936,252 | NS | A/G | L/S | 1000GP (CEU, CHBJPT) |
11 | 55,936,290 | 55,936,290 | SYN | A/G | Y/Y | 1000GP (CEU) |
11 | 100 | -100 | NS | C/T | V/I | 1000GP (YRI, YRI, YRI, YRI, YRI) |
11 | 100 | -100 | SYN | G/A | I/I | 1000GP (YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
11 | 55,689,863 | 55,849,156 | CopyNumber | Variation_2927 (DGV) |
11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
11 | 55,685,799 | 55,842,512 | CopyNumber | Variation_9189 (DGV) |
11 | 55,685,556 | 55,819,544 | CopyNumber | Variation_29912 (DGV), Variation_48846 (DGV) |
11 | 55,685,556 | 55,796,170 | CopyNumber | Variation_48845 (DGV) |
11 | 55,685,556 | 55,836,620 | CopyNumber | Variation_48847 (DGV) |
11 | 55,686,728 | 55,708,815 | CopyNumber | Variation_53078 (DGV) |
11 | 55,683,109 | 55,833,490 | CopyNumber | Variation_85786 (DGV) |
11 | 55,700,935 | 55,703,976 | Deletion | #218 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
V306I | P289L | I217M | C143S | S114A | F76S | L50S | R6G | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|
1 | V | P | I | C | S | F | L | R | 81.18 | 0.076 |
2 | V | P | I | C | S | F | S | R | 10.37 | 0.076 |
3 | I | P | I | C | S | S | L | G | 4.22 | 0.076 |
4 | V | L | I | C | S | F | L | R | 2.84 | 0.745 |
5 | V | P | M | S | S | F | L | R | 0.61 | 0.076 |
6 | V | P | I | C | S | S | L | G | 0.31 | 0.076 |
7 | I | P | I | C | S | S | L | R | 0.15 | 0.076 |
8 | I | P | I | C | S | F | L | R | 0.08 | 0.076 |
9 | V | P | M | C | S | F | L | R | 0.08 | 0.076 |
10 | V | P | I | C | A | F | L | R | 0.08 | 0.076 |
11 | V | P | I | C | S | F | L | G | 0.08 | 0.076 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR5I1.aApr07-unspliced | main_exon | 3UTR | chr11 | 55,935,456 | 55,935,459 | - |
CDS | chr11 | 55,935,459 | 55,936,400 | - |