OR5M6P Olfactory Receptor
| Gene Symbol | OR5M6P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | M |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-186, OR11-197, HsOR11.11.74P, ORL3509 |
| External Ids | HGNC: 14814 GeneBank: AB065502, AB065583, AF399358, BK004643, BK004653, NG_004150 ORDB: ORL3509 |
| Build #39 labels | OR5M6P |
| Chromosomal location | 11:56,512,234-56,513,170 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5M7P | 86.22% | 312 |
| OR5M8 | 85.53% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5M8 | 84% | 311 |
| Mouse | Or5m8 | 80% | 310 |
| Rat | Or5m8 | 80% | 310 |
| Cow | OR5M8P | 76% | 302 |
| Orang | OR8D4 | 53% | 307 |
| Horse | OR5M8 | 82% | 311 |
| Chimp | OR5M6 | 96% | 312 |
Sequence information
| Nucleotide sequence |
ATGAGAAGAAACTGTACATTGGTGACTGAGTTCATTCTCCTGGGACTGGCCAATCACCGG GAATTACAGATTTTCCTCTTCACGCTGTTTCTCACCATTTACATGGTCACGGTGGCAGGA AATCTTGGCATGATTGCCCTCATCCAGGCCAACGCCCCGGCTCCACACGCCCATGTACTT TTTCCTGAGCAACTTATCCTTTGTGGATCTGTGCTTCTCTTCCAATGTGACTCCAAGGAT GCTGGAGATTTTCCTTTCAGAGAAGAAAAGCATTTCCTATCCTGCCCGTCTTGTGCAGTG TTACCTTTTTATCACCTTGGTCCACGTTGAGCTCTACATCCTGGCTGTGATGGCCTTTGA CCGGTACATGGCCATCTGCAACCCTCTGCTTTATGGCAGCAGAATGTCCAAGAGCGTGTG CTCTTTCCTCATCACAGTGCTTTATGTGTATGGAGCACTCACTGGCCTGATGGAGACTAT GTGGACCTACAACCTAGCCTTCTGTGGCCCCAGTGAAATTAATCACTTCTACTGTGTGGA CCCACCACTGATTAAGCTGGCTTGTTCTGACACCTACAACAAGGAGGTGTCAATGTTTGT TGTGGCTGGTTTCAACTTCACTTATCCTCTCCTTATCATCCTCATTTCCTATCTCTACAT ATTTCCTGCCACCCTAAGGATCTGCTCTACAGAAGGCAGGCACAAAGCTTTTTCTACCTG TGGCTCCCATCTGACAGCCGTTACTATTTTCTATTCAGCTCTTTTCTTCATGTATCTCAG ACGTCCATCAGAAGAGTCCATGGAGCAGGGGAAAATGGTAGCTGTATTTTATACCACTGT AATCCCCATGTTGAATCCCATGATCTACAGTCTGAGGAACAAAGATGTGAAAGAGGCATT ATGCAAAGAACTGTTCAAAAGAAAATTGTTTTCTAAA |
| Conceptual translation |
MRRNCTLVTEFILLGLANHRELQIFLFTLFLTIYMVTVAGNLGMIALIQA\PRLHTPMY FFLSNLSFVDLCFSSNVTPRMLEIFLSEKKSISYPARLVQCYLFITLVHVELYILAVMAF DRYMAICNPLLYGSRMSKSVCSFLITVLYVYGALTGLMETMWTYNLAFCGPSEINHFYCV DPPLIKLACSDTYNKEVSMFVVAGFNFTYPLLIILISYLYIFPATLRICSTEGRHKAFST CGSHLTAVTIFYSALFFMYLRRPSEESMEQGKMVAVFYTTVIPMLNPMIYSLRNKDVKEA LCKELFKRKLFSK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,280,110 | 56,280,110 | SNP | A/G | rs56394926 (DbSNP) | |
| 11 | 56,280,411 | 56,280,411 | SNP | C/T | rs73469369 (DbSNP) | |
| 11 | 56,280,634 | 56,280,634 | SNP | G/A | rs680490 (DbSNP) | |
| 11 | 56,280,589 | 56,280,589 | SNP | G/A | rs594568 (DbSNP) | |
| 11 | 56,512,634 | 56,512,634 | SNP | A/G | 1000GP (CEU) | |
| 11 | 56,513,002 | 56,513,002 | SNP | C/T | 1000GP (CEU) | |
| 11 | 56,513,113 | 56,513,113 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,513,158 | 56,513,158 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 127 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.