OR7A2P Olfactory Receptor
| Gene Symbol | OR7A2P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR19-19, OLF4p, hg1003, OR19-18, HsOR19.3.5P |
| External Ids | HGNC: 8370 GeneBank: AB065924, AF399544, BK004677, NG_004087 |
| Build #39 labels | OR7A2 |
| Chromosomal location | 19:14,863,789-14,864,772 (-) |
| Cluster | 19@15a |
| Synteny | CLIC#45 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7A10 | 80.58% | 309 |
| OR7A17 | 80.66% | 305 |
| OR7A1P | 78.43% | 306 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7A23 | 74% | 321 |
| Mouse | Or7a40 | 74% | 305 |
| Rat | Or7a41 | 74% | 304 |
| Cow | OR7A65 | 77% | 308 |
| Orang | OR7A2 | 92% | 331 |
| Horse | OR7A96 | 79% | 305 |
| Chimp | OR7A10 | 80% | 309 |
Sequence information
| Nucleotide sequence |
TTCTTTCTTGTGTGTTTTTTTGTTTGTTTGTTTGTTTTTGGTAGAAACATCAACCAGGTG AAAGCAGGGAATGAGACACAAATTTCAGAATTTCTTCTTCTAGGATTTTCAGAGAAACAA GAATTGCAGCCCTTCCTCTTTGGGCTGTTCCTGTCCATGTACCTGGTCACTGTGCTCGGG AACCTGCTCATCATCCTGGCCGCAATCTCAGACTCCTGCCTCCACACCCCCATGTACTTC TTTCTCTCCAACCTGTCCTTCGTAGATATCTGTTTTGCCTCCACCATGGTCCCAAAGATG TTGGTGAACATCCAGACACAGAGCAAAGTCATTACCTATGCAGGTTGCATCACCCAGATG TGCTTTTTTGTACTCTTTATAGTGTTGGACAGCTTACTCCTGACCGTGATGGCCTATGAC CAGTTTGTGGCCATCTGTCACCCCCTGCACTACACGGTCATCATGAGCCCTCAGCTCTGT GGACTGCTGGTTCTGGTGTCCTGGATCATGAGTGTCCTAAACTCCATGTTACAAAGCTTA GTGACATTGCAGTTGTCCTTCTGCACAGACTTGGAAATCCCTCACTTTTTCTGTGAACTT AATGAGATGATCCACCTTGCCTGTTCTGACACCTTTGTGAACAACATGGTGATGCATTTT GCAGCTGTGCTGCTGGACGGTGGTCCTCTCGTTGGGATCCTTTATTCTTACTGTAGGATA GTTTCCTCCATACGTGCAATCTCGTCAACTCAGGGGAAGTACAAGGCACTTTCCACCTGT GCATCTCACCTCTCAGTTGTCTCCATATTTTATGGTACGGGGCTAGGGGTGTACCTTAGC TCTACTATGACCCAAAACTTACACTCAACTGCTGTCGCCTCGGTGATGTACACTGTGGTC ACCCCCATGCTCAACCCCTTCATTTACAGTCTGAGGAATAAAGACATAAAGGGGGCTCTG ACACAATTCTTCAGAGGGAAACAA |
| Conceptual translation |
FFLVCFFVCL/CFWXH\QVKAGNETQISEFLLLGFSEKQELQPFLFGLFLSMYLVTV LGNLLIILAAISDSCLHTPMYFFLSNLSFVDICFASTMVPKMLVNIQTQSKVITYAGCIT QMCFFVLFIVLDSLLLTVMAYDQFVAICHPLHYTVIMSPQLCGLLVLVSWIMSVLNSMLQ SLVTLQLSFCTDLEIPHFFCELNEMIHLACSDTFVNNMVMHFAAVLLDGGPLVGILYSYC RIVSSIRAISSTQGKYKALSTCASHLSVVSIFYGTGLGVYLSSTMTQNLHSTAVASVMYT VVTPMLNPFIYSLRNKDIKGALTQFFRGKQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 19 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 19 | 14,864,082 | 14,864,082 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 19 | 14,864,118 | 14,864,118 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 19 | 14,864,228 | 14,864,228 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 19 | 14,864,556 | 14,864,556 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 19 | 14,864,615 | 14,864,615 | SNP | A/G | 1000GP (CEU) | |
| 19 | 14,864,659 | 14,864,659 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 19 | 14,864,732 | 14,864,732 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 19 | 14,974,894 | 14,974,894 | SNP | T/C | rs61741191 (DbSNP) | |
| 19 | 14,974,930 | 14,974,930 | SNP | A/G | rs10407452 (DbSNP) | |
| 19 | 14,975,040 | 14,975,040 | SNP | A/G | rs10407682 (DbSNP) | |
| 19 | 14,975,181 | 14,975,181 | SNP | C/G | rs58200754 (DbSNP) | |
| 19 | 14,975,209 | 14,975,210 | In-Del(2) | -/TT | rs59405534 (DbSNP) | |
| 19 | 14,975,368 | 14,975,368 | SNP | A/G | rs10415965 (DbSNP) | |
| 19 | 14,975,427 | 14,975,427 | SNP | A/G | rs10416150 (DbSNP) | |
| 19 | 14,975,471 | 14,975,471 | SNP | C/T | rs11085912 (DbSNP) | |
| 19 | 14,975,544 | 14,975,544 | SNP | A/C | rs10415572 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.