OR7E53P Olfactory Receptor
| Gene Symbol | OR7E53P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR3-142, OR3-143, HsOR3.5.4P, ORL3104 |
| External Ids | HGNC: 8428 GeneBank: AF399381, HSA325091, HSA338755, HSA340800, NG_002316, U86261, U86262 ORDB: ORL3104 |
| Build #39 labels | OR7E53P, OR7E132P |
| Chromosomal location | 3:125,734,236-125,735,244 (+) |
| Cluster | 3@125 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E12P | 91.72% | 314 |
| OR7E148P | 89.59% | 317 |
| OR7E21P | 89.18% | 342 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 66% | 331 |
| Mouse | Or7e178 | 66% | 313 |
| Rat | Or7e173 | 64% | 306 |
| Cow | OR7E193 | 65% | 326 |
| Orang | OR7E12P | 88% | 312 |
| Horse | OR7E225 | 69% | 310 |
| Chimp | OR7E53BP | 90% | 317 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | AA815433 |
Sequence information
| Nucleotide sequence |
TTGTTTCCGATTTTGCAACCATCTTTTCCAGGCAAAAGAGGGTTGTATCCAAACGATACA GACCCACAGAGTATAACAGATGTCTCTATATTCCTCCTCCTCGAACTCTCAGAGGATCCA GAACTGCAACCGGTCGTCGCTGGGCTGTTCCTGTCCATGTGCCTCGTCATGGTGCTGGGG AACCTGCTCATCATCCTGGACGTCAGCCCTGACTCCCACCTCCCCACCCCCATGTACTTC TTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATG ATTGTGGACATCCAGTCTCACAGCAGAGTCATCTATGCAGGCTGCCTGACTGTGATGTCT CTCTTTGCCATTTTTGGAGGCATGGAAGAGAGACATGCTCCTGAGTGTGATGGCCTATGA CCGGTTTGTAGCCATCTGTCACCCTCTATATCGCTCAGCCATCTTGAACCCGTGTTTCTG TGGCTTCCTAGATTTGTTGTCTTTTTTTTTTTTCCCTCAGTCTTTTAGACTCCCAGCTGC ACAACTTGATTGCCTTACAAATGACCTGCTTCAAGGATGTGGAAATTCCTAATTTCTTCT GGGAACCTTCTCAACTCCCCCATCTTGCATGTTGTGACACCTTCACCAGGAACATCAGCA TGTATTTCCCTGCTGCCGTATTTGGTTTTCTTTCCATCTCGGGGACCCTTTTCTCTTACT GTAAAATGGTTTCCTCCATTCTGAGGGTTTCATCATCAGGTGGGAAGTATAAACCTTCTC CACCTGAGGGTCCCACCTGTCAGTTGTTTGCTGATTTTATGGAACAGGCGTTGGAGAGTA CCTCGGTTCAGATGTGTCATCTTCCCCGAGAAAGGGTGCAGTGGCCTCAGTGATGTACAC GGTGGTCACCCCCATGCTGAACCCCTTCATCTACAGCCTGAGAAACGGGGATATTAAAAG TGTCCTGCGGCGGCCGCAAGGCAGCACAGTCTCATCTCAATACCTTCTT |
| Conceptual translation |
LFPILQPSFPGKRGLYPNDTDPQSITDVSIFLLLELSEDPELQPVVAGLFLSMCLVMVLG NLLIILDVSPDSHLPTPMYFFLSNLSLPDIGFTSTTVPKMIVDIQSHSRVIYAGCLTVMS LFAIFGGMEE\MLLSVMAYDRFVAICHPLYRSAILNPCFCGFL\CCLFFFSLSLLDSQ LHNLIALQMTCFKDVEIPNFFWEPSQLPHLACCDTFTRNISMYFPAAVFGFLSISGTLFS YCKMVSSILRVSSSGGKYK/FSTXSHLSVVCXYGTGVGEYLGSDVSSSPRKGAVASV MYTVVTPMLNPFIYSLRNGDIKSVLRRPQGSTVSSQYLL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 125,453,151 | 125,453,151 | SNP | A/C | rs2971276 (DbSNP) | |
| 3 | 125,453,569 | 125,453,569 | SNP | A/G | rs2947643 (DbSNP) | |
| 3 | 125,453,257 | 125,453,257 | SNP | A/G | rs2976815 (DbSNP) | |
| 3 | 125,453,404 | 125,453,404 | SNP | A/G | rs2976816 (DbSNP) | |
| 3 | 125,453,977 | 125,453,977 | SNP | A/T | rs2976819 (DbSNP) | |
| 3 | 125,453,540 | 125,453,540 | SNP | C/T | rs2971277 (DbSNP) | |
| 3 | 125,453,592 | 125,453,592 | SNP | C/T | rs9875676 (DbSNP) | |
| 3 | 125,453,908 | 125,453,908 | SNP | G/T | rs2976818 (DbSNP) | |
| 3 | 125,453,782 | 125,453,782 | SNP | G/T | rs2947649 (DbSNP) | |
| 3 | 125,453,599 | 125,453,599 | SNP | G/T | rs2976817 (DbSNP) | |
| 3 | 125,734,414 | 125,734,414 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 3 | 125,734,697 | 125,734,697 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 3 | 125,734,749 | 125,734,749 | SNP | C/T | 1000GP (CEU) | |
| 3 | 125,734,939 | 125,734,939 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 3 | 125,735,065 | 125,735,065 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 3 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 3 | 125,444,563 | 125,463,279 | CopyNumber | Variation_22886 (DGV) |
| 3 | 125,443,608 | 125,458,762 | CopyNumber | Variation_38943 (DGV) |
| 3 | 125,399,139 | 125,465,506 | CopyNumber | Variation_68444 (DGV) |
| 3 | 125,416,714 | 125,645,185 | CopyNumber | Variation_91514 (DGV) |
| 3 | 125,416,714 | 125,474,884 | CopyNumber | Variation_91515 (DGV) |
| 3 | 125,452,979 | 125,456,087 | CopyNumber | #141 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.