OR8F1P Olfactory Receptor
| Gene Symbol | OR8F1P1 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | F |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-287, OR11-290, HsOR11.18.20P, ORL3473 |
| External Ids | HGNC: 14691 GeneBank: AB065602, AF399347, BK004635, BK004711, NG_004340 ORDB: ORL3473 |
| Build #39 labels | OR8F1P |
| Chromosomal location | 11:124,207,183-124,208,145 (+) |
| Cluster | 11@124 |
| Synteny | CLIC#29 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8G2P | 75.4% | 309 |
| OR8G3P | 74.67% | 304 |
| OR8G5 | 74.92% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|
Sequence information
| Nucleotide sequence |
ATGGTAAAAGGAAATCATTCCACGGTGACTGAATTTAATCTCGCTGGGCTAACAGACAAA CCAGAGCTCCAGCTGCCTCTTTTCCTCCTCTTCCTGGGAATCTATGTGGTCACAGTGGTG GGCAACCTGAGCATGATCACTCTAATAGGGTTCAGTTCTCACCTGCACACCCCCATGTAC CATTTCCTCAGCAGTCTGTCCTTCATTGATCTCTGCCAGTCTTCTGTCATTACCCCAAAA ATGCTGGTGAATTTTGTGTCAGAGAGGAATATTATCTCCTACCCAGCATGCATGACTCAG CTCTACTTCTTCCTTGTTCTTGTCATATCTGAATGTCACATGTTGGCTGCAATGGCTTAT GACCACTACATTGCCATATGTAACCCACTGCTTTACCATGTCGCCATGTCTTATCAGGTC TGCTCCTGGATGGTAGTTGAGGTGTATTTTATGGGCTTTATTGGTGCTACGTGCTCACAC AGTCTGCATGCTAAGAGTGCTTTTCTGTAAGGCTGATGTAATCAACCATTACTTCTGTGA TCTTTTCCCACTACTGGAGCTCTCCCGCTCCAGTATTTCTATCAATGAAATAGTAGTTTG TGCTTCAGTGCATTTAATATCCTTTTCCGCAGCCTCACCATCCTTAGCTCTTACATCTTC ATCGTTGCCAGCATCCTCTGCATTCGCTCCACTGAGGGCAGGTCCAAAACCTTCAGCACT TGCAGCTCCCACATCTCGGCTGTTTCTGTTTTCTTTGGGTCTGCAGCATTCATGTACCTG CAGCCATCATCCGTCAGCTCCATGGACCAGGGGAGTGTCTTCTGTGTTTTATGCTACTGT TGTGCCCATGCTGAACCCCCAATCTACAGCCTGAGGAATAAAGATGTCAAAGTTGCCTTA ATTAAGTTCCTTGAAAAAAGAAGTTTCCTGTGAAAGTTGCCTTAAATAAGCTCCTTGAAA AAA |
| Conceptual translation |
MVKGNHSTVTEFNLAGLTDKPELQLPLFLLFLGIYVVTVVGNLSMITLIGFSSHLHTPMY HFLSSLSFIDLCQSSVITPKMLVNFVSERNIISYPACMTQLYFFLVLVISECHMLAAMAY DHYIAICNPLLYHVAMSYQVCSWMVVEVYFMGFIGAT\HTVCMLRVLFCKADVINHYFC DLFPLLELSRSSISINEIVVC/FSAFNILFRSLTILSSYIFIVASILCIRSTEGRSKTF STCSSHISAVSVFFGSAAFMYLQPSSVSSMDQ//VSSVFYATVVPMLNP/IYSLRNK DVKVALIKFLEKRSFLXLPXSSLKK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 124,078,360 | 124,078,360 | SNP | A/G | rs2846229 (DbSNP) | |
| 11 | 124,078,576 | 124,078,576 | SNP | C/T | rs58193483 (DbSNP) | |
| 11 | 124,078,704 | 124,078,704 | SNP | A/G | rs11219499 (DbSNP) | |
| 11 | 124,078,704 | 124,078,705 | mnp | AA/GT | rs71462043 (DbSNP) | |
| 11 | 124,078,705 | 124,078,705 | SNP | A/T | rs11219500 (DbSNP) | |
| 11 | 124,078,709 | 124,078,709 | SNP | T/C | rs2512286 (DbSNP) | |
| 11 | 124,207,224 | 124,207,224 | SNP | C/T | 1000GP (CEU) | |
| 11 | 124,207,225 | 124,207,225 | SNP | G/T | 1000GP (CEU) | |
| 11 | 124,207,653 | 124,207,653 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 124,207,925 | 124,207,925 | SNP | T/G | 1000GP (CHBJPT) | |
| 11 | 124,207,997 | 124,207,997 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 124,207,998 | 124,207,998 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 124,208,002 | 124,208,002 | SNP | T/C | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 124,077,790 | 124,080,852 | Deletion | #231 (Waszak) |
| 11 | 124,078,778 | 124,079,439 | InDel | Variation_66086 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.