OR9I2P Olfactory Receptor
| Gene Symbol | OR9I2P1 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | I |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-229, HsOR11.12.6P, ORL3443 |
| External Ids | HGNC: 15324 GeneBank: AF179762, AY284293-AY284324, BK004563, NG_002279 ORDB: ORL3443 |
| Build #39 labels | OR9I2P |
| Chromosomal location | 11:58,144,426-58,145,421 (+) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9I1 | 60.26% | 307 |
| OR9Q1 | 53.67% | 313 |
| OR9Q2 | 55.66% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9I2 | 80% | 327 |
| Mouse | Or9i2 | 78% | 313 |
| Rat | Or9i2 | 77% | 313 |
| Cow | OR9I2 | 77% | 327 |
| Orang | OR9I2 | 91% | 333 |
| Horse | OR9I2 | 80% | 326 |
| Chimp | OR9I1 | 60% | 313 |
Sequence information
| Nucleotide sequence |
TTAATGAGACTTTATTATTATTATTTTTTAATTTCAGTGGATAACGTTGGCTTCATGGCA GAGAGTGGCACCACGGTGACAGAATTTTTTCTGAGGGGGTTCCGGTTGAAGGCAGAGCTG CAGATAGGTCTCTTCTTTGTGTTTCTGGTCATTTTTCTCATCACCATGGGGGGCAACCTG GGCATGATTGTGCTAATTTAATTCAGACTGACCCTCGGCTCCAGACTCCCATGTACTTCT TCCTCAGTCATCTTTCCTTCCTGGACATTTGCTACTCTTCTGTTATTGGTCCTCAGTTGC TTGAGACTTTGGGACTGATAAGATGATCATCACCTATGAGCGCTGTGCCAGCCAATTCTT CTTTTTCACACTCTGTGCTAGCATTGAGTGTTTCCTTTTGGCTGTGATGGCTTATGACCG GTACGTGGCTGTGTGTAACCCCCTCCTCTATGCCATAGTCATGACACCAAAGACCCGCCT GGCGCTGCTGGCCGGGGCATATTCTGGTGCCATAGTCAATTCTGTGATCTGCACTGGCTG CACCTTCTCTATCTCCTTCTCTAAGTCCAACCATGTAGACTTCTTTTTCTGTGACCTCCC ACCCCTGCTGAAGCTTGCCTGTAGTGAAACCAGGCCACGGGAATGGGTAATCTACCTCTC AGCTTTTCTGGTCATCACAACCAGCATTTCAGTGATTCTTACATCGTACTTGTTCATCAT TCAGTCTGTTCTGAAGATTCGTACAGCAGGTGGAAAGCCAAGACCTTCTCCACCTGTGCT TCTCACATGACTGCATTGACTCTCTTCTTTGGAACACTCATATTCATATACCTGAAAGGC AACATGGGCGAATCCCTTGAGGAAGACAAGATCGTGTCAATATTTTACACTGTGGTCATC CCCATGCTAAATCCAATGATCTACAGCCTGAGAAACAAAGACATGAAAGAGGCTCTGAAG AAAGTTTTCAACAGGATAAGGGTTTCCCAAGCAGAG |
| Conceptual translation |
LMRLYYYYFLISVDNVGFMAESGTTVTEFFLRGFRLKAELQIGLFFVFLVIFLITMGGNL GMIVL/LIQTDPRLQTPMYFFLSHLSFLDICYSSVIGPQLL/DFGTDKMIITYERCAS QFFFFTLCASIECFLLAVMAYDRYVAVCNPLLYAIVMTPKTRLALLAGAYSGAIVNSVIC TGCTFSISFSKSNHVDFFFCDLPPLLKLACSETRPREWVIYLSAFLVITTSISVILTSYL FIIQSVLKIRTAGG/AKTFSTCASHMTALTLFFGTLIFIYLKGNMGESLEEDKIVSIFY TVVIPMLNPMIYSLRNKDMKEALKKVFNRIRVSQAE Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 57,911,908 | 57,911,909 | Del(2) | -/TT | rs35928418 (DbSNP) | |
| 11 | 57,911,911 | 57,911,911 | Del(1) | -/A | rs34943687 (DbSNP) | |
| 11 | 57,911,919 | 57,911,921 | In-Del(3) | -/AAT | rs71847766 (DbSNP) | |
| 11 | 57,911,920 | 57,911,920 | SNP | A/T | rs67778194 (DbSNP) | |
| 11 | 57,911,920 | 57,911,922 | In-Del(3) | -/AAT | rs67778193 (DbSNP) | |
| 11 | 57,912,292 | 57,912,292 | Del(1) | -/C | rs59033801 (DbSNP) | |
| 11 | 57,912,366 | 57,912,365 | Ins(1) | -/A | rs34531982 (DbSNP) | |
| 11 | 57,912,539 | 57,912,538 | Ins(1) | -/A | rs35546731 (DbSNP) | |
| 11 | 57,912,625 | 57,912,625 | SNP | G/A | rs2443433 (DbSNP) | |
| 11 | 57,912,638 | 57,912,638 | SNP | A/G | rs7945154 (DbSNP) | |
| 11 | 57,912,650 | 57,912,650 | SNP | A/G | rs2441983 (DbSNP) | |
| 11 | 57,912,693 | 57,912,693 | SNP | G/T | rs2245676 (DbSNP) | |
| 11 | 57,912,766 | 57,912,766 | SNP | A/G | rs12577581 (DbSNP) | |
| 11 | 58,144,819 | 58,144,819 | SNP | C/T | 1000GP (CEU) | |
| 11 | 58,145,050 | 58,145,050 | SNP | T/A | 1000GP (CEU) | |
| 11 | 58,145,128 | 58,145,128 | SNP | A/G | 1000GP (CEU) | |
| 11 | 58,145,153 | 58,145,153 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 58,145,166 | 58,145,166 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 58,145,178 | 58,145,178 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 58,145,221 | 58,145,221 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 58,145,294 | 58,145,294 | SNP | A/G | 1000GP (CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 172 (Hasin) | |||
| 11 | 57,912,509 | 57,948,750 | CopyNumber | Variation_4745 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.