Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR4A13P Olfactory Receptor

Gene Symbol OR4A13P1 (View this gene in GeneCards)
Family 4
Subfamily A
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-126, OR11-120, OR11-122, OR11-123, HsOR11.11.9P, ORL3593
External Ids HGNC: 15150   GeneBank: AB065596, AF546434-AF546447, AY283973-AY284004, BK004631, BK004650, BK004680, BK004801, NG_004242   ORDB: ORL3593   
Build #39 labels OR4A13P
Chromosomal location 11:55,466,771-55,467,712 (+)
Cluster 11@56
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR4A11P 82.78% 302
OR4A1P 79.8% 307
OR4A40P 82.67% 300

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR4A39 76% 308
Mouse Or4a39 74% 311
Rat Or4a77e 72% 311
Cow OR4A2 69% 303
Orang OR4A47P 66% 304
Horse OR4A124 75% 311
Chimp OR4A13 95% 314

Expression evidences

Source Accession
mRNA AB529256

Sequence information

Nucleotide sequence ATGAGACCTAATAACAGTATTACAGAATTTGTCCTCCTGGGCTTTTCACAGGATCCTGAT
ATGCAAAACACATTATTTGTCATGTTTTTACTCACATACATTGTGACAGTGGTGGGGAAC
CTACTCGTTGCGGTGACTATTATTGTCAGCCCTTCCTTGAGCTCCCCAATGTAATTCTTC
CTTGCTTGCCTGTCATTAATAGATGCTGTATTATCCACCACCATTTCTCCCATATTGATT
GTAGACCTACTCTGTGACAAAAAGACTATTTCCTTCCCAGCTTGCATGGGCCAGCTATTT
ACAGACCACTTGTTTGGTGGAACTGAGATCTTCCTTCTGGTGGTGATGGCCTATGATCGC
TACGTGGCCATCTGTAAGCCACTGCACTATTTAACCATCATGAATCGACAGGTTTCCATC
CTTCTGTTGGTGGTGGCCATGACTGGAGGTTTCCTTCATTCTGTGTTTCAAATTGCTGTT
CTGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCACTTTTTCTGTGACATGTAC
CCATTATTGGAACTGGCGTGCACTGACACCTACTCTATAGGCCTCACTGTAGTTTTCAGT
GGTGGAGCAATGTGTATGGTCATCTTCGCCCTTCTACTAATCTCCTATGGAGTCAGCCTA
AACTCCCTTAAAACTTATAGTCAGGAAGGGAGGCGTAAAGCCCTGTCTACCTGCAGCTCG
CACATCACCGTGGTTGTCCTCTTTTTTGTTCCCTGTATTTTCATGTATGTTAGACCTGTC
TCAAACTTCCCTATTGATAAATTCGTTACTGTGTTTTATACATTTATCACACCCATGCTG
AATCCTTTTTTATACACGTTGAGAAATTCAGAGATGATAAATGCTATAAAACACCTGTTG
TGTAAGAAGCTAACTATAGTTAGAATAAGAGTGTCCCTCCTC
Conceptual translation MRPNNSITEFVLLGFSQDPDMQNTLFVMFLLTYIVTVVGNLLVAVTIIVSPSLSSPMXF
LACLSLIDAVLSTTISPILIVDLLCDKKTISFPACMGQLFTDHLFGGTEIFLLVVMAYDR
YVAICKPLHYLTIMNRQVSILLLVVAMTGGFLHSVFQIAVLYSLPFCGPNVIDHFFCDMY
PLLELACTDTYSIGLTVVFSGGAMCMVIFALLLISYGVSLNSLKTYSQEGRRKALSTCSS
HITVVVLFFVPCIFMYVRPVSNFPIDKFVTVFYTFITPMLNPFLYTLRNSEMINAIKHLL
CKKLTIVRIRVSLL

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 55,234,707 55,234,706 Ins(1) -/A rs35316755 (DbSNP)
11 55,234,832 55,234,832 SNP A/G rs61917962 (DbSNP)
11 55,234,605 55,234,605 SNP A/G rs2017467 (DbSNP)
11 55,234,406 55,234,406 SNP A/G rs61916458 (DbSNP)
11 55,234,415 55,234,415 SNP A/G rs11229834 (DbSNP)
11 55,234,263 55,234,263 SNP A/G rs558600 (DbSNP)
11 55,234,722 55,234,722 SNP C/T rs61916459 (DbSNP)
11 55,234,828 55,234,828 SNP C/T rs59710012 (DbSNP)
11 55,234,821 55,234,821 SNP C/T rs61917961 (DbSNP)
11 55,234,738 55,234,738 SNP C/T rs61917960 (DbSNP)
11 55,234,680 55,234,680 SNP G/T rs1968300 (DbSNP)
11 55,235,069 55,235,069 SNP G/T rs670525 (DbSNP)
11 55,466,787 55,466,787 SNP G/A 1000GP (CEU, CHBJPT)
11 55,466,930 55,466,930 SNP A/G 1000GP (CEU)
11 55,467,129 55,467,129 SNP G/A 1000GP (CEU, CHBJPT)
11 55,467,246 55,467,246 SNP C/T 1000GP (CEU)
11 55,467,262 55,467,262 SNP C/T 1000GP (CEU)
11 55,467,309 55,467,309 SNP A/T 1000GP (CEU)
11 55,467,345 55,467,345 SNP C/T 1000GP (CEU)
11 55,467,356 55,467,356 SNP A/G 1000GP (CEU)
11 55,467,593 55,467,593 SNP T/G 1000GP (CHBJPT)
11 100 -100 SNP G/A 1000GP (YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 55,153,930 55,816,828 CopyNumber Variation_0308 (DGV)
11 55,222,420 55,621,884 CopyNumber Variation_3852 (DGV)
11 55,183,726 55,258,691 CopyNumber Variation_6922 (DGV)
11 54,835,623 55,879,426 CopyNumber Variation_8690 (DGV)
11 55,121,706 55,340,753 CopyNumber Variation_9185 (DGV)
CopyNumber 97 (Hasin)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.