Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR7E53P Olfactory Receptor

Gene Symbol OR7E53P1 (View this gene in GeneCards)
Family 7
Subfamily E
Pseudogene Yes
CORP pseudogene probability score
Aliases OR3-142, OR3-143, HsOR3.5.4P, ORL3104
External Ids HGNC: 8428   GeneBank: AF399381, HSA325091, HSA338755, HSA340800, NG_002316, U86261, U86262   ORDB: ORL3104   
Build #39 labels OR7E53P, OR7E132P
Chromosomal location 3:125,734,236-125,735,244 (+)
Cluster 3@125
Synteny CLIC#0
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR7E12P 91.72% 314
OR7E148P 89.59% 317
OR7E21P 89.18% 342

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR7E24 66% 331
Mouse Or7e178 66% 313
Rat Or7e173 64% 306
Cow OR7E193 65% 326
Orang OR7E12P 88% 312
Horse OR7E225 69% 310
Chimp OR7E53BP 90% 317

Expression evidences

Source Accession
ESTs AA815433

Sequence information

Nucleotide sequence TTGTTTCCGATTTTGCAACCATCTTTTCCAGGCAAAAGAGGGTTGTATCCAAACGATACA
GACCCACAGAGTATAACAGATGTCTCTATATTCCTCCTCCTCGAACTCTCAGAGGATCCA
GAACTGCAACCGGTCGTCGCTGGGCTGTTCCTGTCCATGTGCCTCGTCATGGTGCTGGGG
AACCTGCTCATCATCCTGGACGTCAGCCCTGACTCCCACCTCCCCACCCCCATGTACTTC
TTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATG
ATTGTGGACATCCAGTCTCACAGCAGAGTCATCTATGCAGGCTGCCTGACTGTGATGTCT
CTCTTTGCCATTTTTGGAGGCATGGAAGAGAGACATGCTCCTGAGTGTGATGGCCTATGA
CCGGTTTGTAGCCATCTGTCACCCTCTATATCGCTCAGCCATCTTGAACCCGTGTTTCTG
TGGCTTCCTAGATTTGTTGTCTTTTTTTTTTTTCCCTCAGTCTTTTAGACTCCCAGCTGC
ACAACTTGATTGCCTTACAAATGACCTGCTTCAAGGATGTGGAAATTCCTAATTTCTTCT
GGGAACCTTCTCAACTCCCCCATCTTGCATGTTGTGACACCTTCACCAGGAACATCAGCA
TGTATTTCCCTGCTGCCGTATTTGGTTTTCTTTCCATCTCGGGGACCCTTTTCTCTTACT
GTAAAATGGTTTCCTCCATTCTGAGGGTTTCATCATCAGGTGGGAAGTATAAACCTTCTC
CACCTGAGGGTCCCACCTGTCAGTTGTTTGCTGATTTTATGGAACAGGCGTTGGAGAGTA
CCTCGGTTCAGATGTGTCATCTTCCCCGAGAAAGGGTGCAGTGGCCTCAGTGATGTACAC
GGTGGTCACCCCCATGCTGAACCCCTTCATCTACAGCCTGAGAAACGGGGATATTAAAAG
TGTCCTGCGGCGGCCGCAAGGCAGCACAGTCTCATCTCAATACCTTCTT
Conceptual translation LFPILQPSFPGKRGLYPNDTDPQSITDVSIFLLLELSEDPELQPVVAGLFLSMCLVMVLG
NLLIILDVSPDSHLPTPMYFFLSNLSLPDIGFTSTTVPKMIVDIQSHSRVIYAGCLTVMS
LFAIFGGMEE\MLLSVMAYDRFVAICHPLYRSAILNPCFCGFL\CCLFFFSLSLLDSQ
LHNLIALQMTCFKDVEIPNFFWEPSQLPHLACCDTFTRNISMYFPAAVFGFLSISGTLFS
YCKMVSSILRVSSSGGKYK/FSTXSHLSVVCXYGTGVGEYLGSDVSSSPRKGAVASV
MYTVVTPMLNPFIYSLRNGDIKSVLRRPQGSTVSSQYLL

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
3 125,453,151 125,453,151 SNP A/C rs2971276 (DbSNP)
3 125,453,569 125,453,569 SNP A/G rs2947643 (DbSNP)
3 125,453,257 125,453,257 SNP A/G rs2976815 (DbSNP)
3 125,453,404 125,453,404 SNP A/G rs2976816 (DbSNP)
3 125,453,977 125,453,977 SNP A/T rs2976819 (DbSNP)
3 125,453,540 125,453,540 SNP C/T rs2971277 (DbSNP)
3 125,453,592 125,453,592 SNP C/T rs9875676 (DbSNP)
3 125,453,908 125,453,908 SNP G/T rs2976818 (DbSNP)
3 125,453,782 125,453,782 SNP G/T rs2947649 (DbSNP)
3 125,453,599 125,453,599 SNP G/T rs2976817 (DbSNP)
3 125,734,414 125,734,414 SNP G/A 1000GP (CEU, CHBJPT)
3 125,734,697 125,734,697 SNP T/C 1000GP (CEU, CHBJPT)
3 125,734,749 125,734,749 SNP C/T 1000GP (CEU)
3 125,734,939 125,734,939 SNP G/T 1000GP (CEU, CHBJPT)
3 125,735,065 125,735,065 SNP G/T 1000GP (CEU, CHBJPT)
3 100 -100 SNP C/T 1000GP (YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
3 125,444,563 125,463,279 CopyNumber Variation_22886 (DGV)
3 125,443,608 125,458,762 CopyNumber Variation_38943 (DGV)
3 125,399,139 125,465,506 CopyNumber Variation_68444 (DGV)
3 125,416,714 125,645,185 CopyNumber Variation_91514 (DGV)
3 125,416,714 125,474,884 CopyNumber Variation_91515 (DGV)
3 125,452,979 125,456,087 CopyNumber #141 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.