OR1D3P Olfactory Receptor
| Gene Symbol | OR1D3P1 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | D |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-13, OR11-22, OR17-23, OR17-5, OR17-90, OR17-12, HsOR17.1.9P, ORL3753 |
| External Ids | HGNC: 8184 GeneBank: AB065571, AB065606, AF065866, AF065868, AF087919, AF399371, AF546336-AF546349, BK004728, BK004762, HSU04679, HSU04685, NG_002298 ORDB: ORL3753 |
| Build #39 labels | OR1D6P, OR1D3P |
| Chromosomal location | 17:3,265,611-3,266,562 (+) |
| Cluster | 17@3b |
| Synteny | CLIC#39 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1D2 | 84.98% | 313 |
| OR1D4 | 83.83% | 303 |
| OR1D5 | 83.17% | 303 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1D10P | 80% | 335 |
| Dog | OR1D3BP | 80% | 313 |
| Mouse | Or1d2 | 83% | 313 |
| Rat | Or1d2 | 83% | 313 |
| Cow | OR1D3 | 82% | 310 |
| Cow | OR1D3B | 80% | 312 |
| Orang | OR1D3 | 92% | 313 |
| Horse | OR1D3 | 86% | 313 |
| Chimp | OR1D2 | 86% | 313 |
| Chimp | OR1D4B | 85% | 311 |
| Chimp | OR1D4 | 83% | 311 |
Sequence information
| Nucleotide sequence |
ATGGATGGAGGCAACCAGAGTGAAGGTTCAGAGTTCCTTCTCCTGGGGATCTCAGAGAGT CCTGAGCAGCAGCAGATGCTGTTTTGGATGTTCCTGGTCAGGTACCTGGTCACGGTGCTG GGAAATGTGCTCATCATCCTGGCCATCAGCTCTGATTCCCGCCTGCACACCCCCATGTAC TTCTTCCTGGCCAACCTCTCCTTCACTGACCTCTTCTTTGTCACCAACACAATCCCCAAG ATGCTGGTGAACCTCCAGTCCCAGAACAAAGCCATCTCCTACACAGGGTGTCTGACACAG CTCTACTTCCTGGTCTCCTTGGTGGCCCTGGACAACCTCAACCTGGCCGTGATGGCGTAT GATCGCTATGTGGCCATCTGCCGTCCCCTCCACTATGTCACAGCCATGATCCCTGGGCTC TGTATCTTGCTCCTCTCCTTGTGTTGGGTGTTCTCTGCCCTCTATGGCCTCATCCATATC CTCCTCATGACCAGGTGACCTTCTGTGGGTCTCAAAAGATCCACTACCTCTTCTGTGAGA TGTACTTCCTGCTAAGGCTGGCATGTTCCAACATCCACGTCAACCACACAGTACTGGTTG CCACGGGCTGCTTCATCTTCCTCATCCCCTTAGGTTTCATGATCACATCCTACGCCCGCA TTGTCAGAGCCATCCTCCAAATACCCTCAGCCACTGGGAAGTACAAAGCCTTCTCCACCT GTGCTTCCCATTTGGCTGTGGTCTCCCTCTTCTATGGGACTCTGGGTATGGTGTACCTGC AGCCCCTCCAAACCTACTCCATGAAGGACTCAGTAGCCACAGTGATGTATGCGGTGGTGA CGCCATGATTAACCCTTTCATCTACAGCCTGAGGAACAAGGACATGCATGGGGCTCTGGG AAGACTTCGCCAAGGAAAAGCCTTCCAGAAGTTGACATGAGGGGTAATTTTG |
| Conceptual translation |
MDGGNQSEGSEFLLLGISESPEQQQMLFWMFLVRYLVTVLGNVLIILAISSDSRLHTPMY FFLANLSFTDLFFVTNTIPKMLVNLQSQNKAISYTGCLTQLYFLVSLVALDNLNLAVMAY DRYVAICRPLHYVTAMIPGLCILLLSLCWVFSALYGLIHILLMT/VTFCGSQKIHYLFC EMYFLLRLACSNIHVNHTVLVATGCFIFLIPLGFMITSYARIVRAILQIPSATGKYKAFS TCASHLAVVSLFYGTLGMVYLQPLQTYSMKDSVATVMYAVVT/MINPFIYSLRNKDMHG ALGRLRQGKAFQKLTXVIL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 17 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI) | |
| 17 | 3,168,956 | 3,168,956 | SNP | C/T | rs28377218 (DbSNP) | |
| 17 | 3,168,958 | 3,168,958 | SNP | A/C | rs28582698 (DbSNP) | |
| 17 | 3,168,978 | 3,168,978 | SNP | A/G | rs769428 (DbSNP) | |
| 17 | 3,169,187 | 3,169,187 | SNP | G/A | rs2459527 (DbSNP) | |
| 17 | 3,169,192 | 3,169,192 | SNP | C/G | rs55907938 (DbSNP) | |
| 17 | 3,169,458 | 3,169,458 | SNP | G/A | rs2062184 (DbSNP) | |
| 17 | 3,169,481 | 3,169,480 | Ins(1) | -/C | rs34776598 (DbSNP) | |
| 17 | 3,265,649 | 3,265,649 | SNP | T/C | 1000GP (CEU) | |
| 17 | 3,265,684 | 3,265,684 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 17 | 3,265,893 | 3,265,893 | SNP | A/G | 1000GP (CEU) | |
| 17 | 3,265,898 | 3,265,898 | SNP | G/C | 1000GP (CHBJPT) | |
| 17 | 3,266,164 | 3,266,164 | SNP | A/G | 1000GP (CEU) | |
| 17 | 3,266,264 | 3,266,264 | SNP | G/A | 1000GP (CEU) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.