OR4A14P Olfactory Receptor
| Gene Symbol | OR4A14P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.11.11P, ORL3594 |
| External Ids | HGNC: 15151 GeneBank: NG_004241 ORDB: ORL3594 |
| Build #39 labels | OR4A14P |
| Chromosomal location | 11:55,477,551-55,478,509 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks | Disrupted by Line repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A17P | 69.49% | 177 |
| OR4A45P | 68.75% | 176 |
| OR4A9P | 67.43% | 175 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 67% | 177 |
| Mouse | Or4a72 | 67% | 177 |
| Rat | Or4a72-ps | 66% | 177 |
| Cow | OR4A2C | 62% | 176 |
| Orang | OR4A47P | 46% | 271 |
| Horse | OR4A142P | 67% | 177 |
| Chimp | OR4A17P | 73% | 177 |
Sequence information
| Nucleotide sequence |
ATGGTTTTAGGTCTAACGTATAAGTCTTTAATCCATCTTGAATTAATTTTTGTATAAGGC ATAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCGCAGCACCAT TTATTAAATAGGGAATCCTTTCCCCATTTCTTGTTTTTGTCAGGTTTGTCAAAGATCAGA TAGTTGTAGATATGCAGCCTTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTAGCATT CTTGTACACCAATAACAGACAAACAGAGAGCCAAATAATGAGTGAACTCCCATTCACAAT TGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGAGACGCAAAGGACCTCTT CAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGAGGTTACAAACAAATGGAAGAA CGTTCCATGCTCATAGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGT AATTTATAAATTCAATGCCATCTTCATCAGTGAATTCTATGTTTCAAATTGTCGTTGTGT ACAGTCTCCCTTTCTGTGGCTCCAATGTCATTGACCACATTGTCTGTGACATGTACCCAT TACTGGAACTGGCATGTGCTGACACCTACTTTATAGGGCTCACTGTGATTGCCAATGGTG GAGCAATCTGTGTGGTCATCTTCTGCCTTCTACTAACCTCCTATGGAGTCATCCTAAACT TCCTTAAAACTTATAGTCAAGAAGGGAGGCATAGAACCCTGTCTACCTGCAGCTCCCACA TTACTGTGGTTGTCCTCTTTTTTGTTCCCTGTATTTTCATGTATGTTAGACCTGTTTCAA ACTTCCCTATTGATAAATTCATTACTGAGTTTTATACAGTTATCACCCCCAAGTTGAATC CATTAATCCAACCACTGAGAAATTGAGAAATGAGAATTACTATGAAGAAACTCTGGTGT |
| Conceptual translation |
MVLGLTYKSLIHLELIFVXIRKGSSFSFLHMASQFSQHHLLNRESFPHFLFLSGLSKI\br/>DSCRYAALFLRALFCSIDLAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDAKDL FKENYKPLLNEIKEVTNKWKNVPCSXGRINIMK\PYCPRXINSMPSSSVNSMFQIVV VYSLPFCGSNVIDHIVCDMYPLLELACADTYFIGLTVIANGGAICVVIFCLLLTSYGVIL NFLKTYSQEGRHRTLSTCSSHITVVVLFFVPCIFMYVRPVSNFPIDKFITEFYTVITPKL NPLIQPLRNXMRITMKKLWC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,245,917 | 55,245,916 | Ins(1) | -/C | rs71457924 (DbSNP) | |
| 11 | 55,245,605 | 55,245,605 | SNP | A/G | rs7128605 (DbSNP) | |
| 11 | 55,245,650 | 55,245,650 | SNP | A/T | rs7128617 (DbSNP) | |
| 11 | 55,245,137 | 55,245,137 | SNP | C/G | rs7106888 (DbSNP) | |
| 11 | 55,245,447 | 55,245,447 | SNP | C/T | rs7122327 (DbSNP) | |
| 11 | 55,245,789 | 55,245,789 | SNP | C/T | rs73465583 (DbSNP) | |
| 11 | 55,245,698 | 55,245,698 | SNP | G/A | rs2851140 (DbSNP) | |
| 11 | 55,245,643 | 55,245,643 | SNP | T/C | rs2553191 (DbSNP) | |
| 11 | 55,478,129 | 55,478,129 | SNP | A/G | 1000GP (CEU) | |
| 11 | 55,478,167 | 55,478,167 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 55,478,174 | 55,478,174 | SNP | A/T | 1000GP (CEU) | |
| 11 | 55,478,222 | 55,478,222 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 55,478,110 | 55,478,110 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 55,478,303 | 55,478,303 | SNP | A/G | 1000GP (CHBJPT) | |
| 11 | 55,478,453 | 55,478,453 | SNP | T/C | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
| 11 | 55,183,726 | 55,258,691 | CopyNumber | Variation_6922 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,121,706 | 55,340,753 | CopyNumber | Variation_9185 (DGV) |
| 11 | 55,244,927 | 55,247,985 | Deletion, CopyNumber | #253 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.